[Pvfs2-users] help with pvfs2 and formatdb (used with BLAST)

Sam Lang slang at mcs.anl.gov
Tue Jun 9 13:57:40 EDT 2009


Hi Becky,
What about the client log?  Anything in there?
-sam

On Jun 9, 2009, at 10:42 AM, Becky Ligon wrote:

> PVFS-USERS:
>
> When I use formatdb to create a BLAST-usable database, I get the  
> error:
>
> [formatdb] ERROR:  Failed to create index:  ISAMErrorCode -5.
>
> The PVFS kernel log shows the following error:
>
> pvfs2_file_write: error in vectored write to handle xxxx, FILE: xxxx.
>
> (the x's have values but are just specific to my database).
>
> I saw a thread in the pvfs2-users archive where someone else has  
> this same
> problem, but there were no responses to it.  Am I just having a setup
> issue with PVFS?
>
> We are running PVFS 2.8.
>
> Any help would be apprecited.
>
> Thanks,
>
> Becky Ligon
> -- 
> Becky Ligon
> Clemson University
> 864-656-3865
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